Useful Links



Online Journals

List of Bioinforrmatics, Functional Genomics, and Related Journals


Bioinformatics Tools and Resources

Bioinformatics Centers
EBI - European Bioinformatics Institute
EMBL - European Molecular Biology Laboratory
ExPASy - Molecular Biology server
NCBI - National Center for Biotechnology Information
Entrez - Browse a subset of MEDLINE, and the NCBI protein and nucleotide databases
Centre for Integrative Bioinformatics VU, The Netherlands
CBS, Center for Biological Sequence Analysis, Technical University of Denmark
BIBISERV, Bielefeld University Bioinforrmatics Server
BSM, Biomolecular Structure and Modelling at UCL
Human Genome Project Information
Sanger centre, Hinxton, England
UK MRC HGMPRC UK Human Genome Mapping Project Resource Centre
DDBJ DNA data bank, Japan
GDB Genome Data Base
HUM-MOLGEN Human Molecular Genetics
Centre of Bioinformatics, Peking

Microarray Data Analysis
Microarray software Suite TM4 this suite includes the following (free for download) packages:
  1. MADAM: MicroArray DAta Manager (facilitates the entry of microarray data into a relational database)
  2. Spotfinder (analysis of microarray images)
  3. MIDAS: Microarray Data Analysis System (normalization and filtering of microarray data)
  4. MeV -Multi-Experiment-Viewer (Includes several methods for analysis of microarray data)

Database Searching
BLAST Server Sequence searches at NCBI
Bioccelerator - Sequence searches at EMBL
Database searches at EBI
Database searches at DISC (Japan) - includes Fasta, BLAST, MPsrch and SRS Fasta
Match sequence against PROSITE

Multiple Sequence Alignment
PRALINE multiple sequence alignment
T COFFEE multiple sequence alignment
Clustal W multiple sequence alignment
SAM, Sequence alignment and modeling system (using HMMs)
AMAS Analysis of multiple alignments (Geoff Barton)
HMMER multiple sequence alignment
DIALIGN 2 multiple sequence alignment
Secondary Structure Prediction
PredictProtein - Server to predict protein structure
PSI-Pred - PSI-BLAST-based protein secondary structure prediction
YASPIN - Server to predict protein secondary structure

Modelling and Data analysis
DALI - Comparison of protein structures in 3D
Pratt - pattern discovery online
Expression Profiler - online tool for expression profile clustering and sequence pattern discovery
PSA, Protein Sequence Analysis: fits a structure model to your sequence
Block Maker, at Fred Hutchinson Cancer Research Center
MEME, Multiple EM for Motif Elicitation