Online Journals
List of Bioinforrmatics,
Functional Genomics, and Related Journals
Bioinformatics Tools and Resources
Bioinformatics Centers
EBI - European
Bioinformatics Institute
EMBL - European Molecular
Biology Laboratory
ExPASy - Molecular Biology server
NCBI - National Center for
Biotechnology Information
Entrez - Browse a
subset of MEDLINE, and the NCBI protein and nucleotide databases
Centre for Integrative Bioinformatics
VU, The Netherlands
CBS, Center for Biological
Sequence Analysis, Technical University of Denmark
BIBISERV,
Bielefeld University Bioinforrmatics Server
BSM, Biomolecular
Structure and Modelling at UCL
Human
Genome Project Information
Sanger centre, Hinxton, England
UK MRC HGMPRC UK Human Genome
Mapping Project Resource Centre
DDBJ DNA data bank,
Japan
GDB Genome Data Base
HUM-MOLGEN Human Molecular
Genetics
Centre of Bioinformatics,
Peking
Microarray Data Analysis
Microarray
software Suite TM4 this suite includes the following (free for
download) packages:
- MADAM:
MicroArray DAta Manager (facilitates the entry of microarray data
into a relational database)
- Spotfinder
(analysis of microarray images)
- MIDAS:
Microarray Data
Analysis System (normalization and filtering of microarray data)
- MeV
-Multi-Experiment-Viewer (Includes several methods for analysis of
microarray data)
Database Searching
BLAST
Server Sequence searches at NCBI
Bioccelerator -
Sequence searches at EMBL
Database
searches at EBI
Database
searches at DISC (Japan) - includes Fasta, BLAST, MPsrch and SRS
Fasta
Match sequence
against PROSITE
Multiple Sequence Alignment
PRALINE
multiple sequence alignment
T COFFEE
multiple sequence alignment
Clustal W multiple
sequence alignment
SAM,
Sequence alignment and modeling system (using HMMs)
AMAS
Analysis of multiple alignments (Geoff Barton)
HMMER
multiple sequence alignment
DIALIGN 2
multiple sequence alignment
Secondary Structure Prediction
PredictProtein
- Server to predict protein structure
PSI-Pred -
PSI-BLAST-based protein secondary structure prediction
YASPIN -
Server to predict protein secondary structure
Modelling and Data analysis
DALI -
Comparison of protein structures in 3D
Pratt - pattern
discovery online
Expression Profiler - online
tool for expression profile clustering and sequence pattern discovery
PSA, Protein Sequence
Analysis: fits a structure model to your sequence
Block
Maker, at Fred Hutchinson Cancer Research Center
MEME, Multiple EM for Motif
Elicitation
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